# Settings for Example Lab # # This file contains default configuration values and is safe to commit to git. # Override any value with environment variables (prefixed, e.g. EVENT_SERVER_URL) # or a .env file (gitignored) for secrets and environment-specific overrides. # See Configuration.md for all available settings. # Lab Manager lab_server_url: http://localhost:8000/ lab_manager_name: "Example Lab" lab_manager_description: "An example MADSci lab for development and testing" # Event Manager event_server_url: http://localhost:8001/ event_manager_name: "Example Event Manager" event_manager_description: "Event manager for the example lab" event_database_name: madsci_events event_mongo_db_url: mongodb://localhost:27017/ # Experiment Manager experiment_server_url: http://localhost:8002/ experiment_manager_name: "Example Experiment Manager" experiment_manager_description: "Experiment manager for the example lab" experiment_database_name: madsci_experiments experiment_mongo_db_url: mongodb://localhost:27017/ # Resource Manager resource_server_url: http://localhost:8003/ resource_manager_name: "Example Resource Manager" resource_manager_description: "Resource manager for the example lab" # Note: resource_db_url contains credentials and is in .env instead. # Default resource templates (plate_nest, storage_stack) used by the location manager. resource_default_templates: - template_name: plate_nest description: Standard plate nest for holding individual plates on instrument decks base_resource: resource_name: plate_nest_template resource_name_prefix: null resource_class: deck_slot base_type: slot resource_description: Plate nest for holding labware on instrument decks owner: {} custom_attributes: null capacity: 1 default_children: null default_child_template: null default_child_quantity: null required_overrides: - resource_name - resource_class tags: - plate - nest - deck - slot version: 1.0.0 - template_name: storage_stack description: High-capacity storage stack for materials base_resource: resource_name: storage_stack_template resource_name_prefix: null resource_class: storage base_type: stack resource_description: High-capacity storage for materials owner: {} custom_attributes: null capacity: 16 default_children: null default_child_template: null default_child_quantity: null required_overrides: - resource_name - resource_class tags: - storage - stack - materials version: 1.0.0 # Data Manager data_server_url: http://localhost:8004/ data_manager_name: "Example Data Manager" data_manager_description: "Data manager for the example lab" data_database_name: madsci_data data_mongo_db_url: mongodb://localhost:27017/ # Workcell Manager workcell_server_url: http://localhost:8005/ workcell_manager_name: "Example Workcell" workcell_manager_description: "An example workcell with liquid handlers, plate reader, and robot arm" workcell_database_name: madsci_workcells workcell_mongo_db_url: mongodb://localhost:27017/ # Workcell node URLs (which nodes belong to this workcell and how to reach them). workcell_nodes: liquidhandler_1: http://localhost:2000/ liquidhandler_2: http://localhost:2001/ robotarm_1: http://localhost:2002/ platereader_1: http://localhost:2003/ advanced_example_node: http://localhost:2004/ # Location Manager location_server_url: http://localhost:8006/ location_manager_name: "Example Location Manager" location_manager_description: "Location manager for the example lab" # Location definitions (deck positions, storage, etc.) location_locations: - location_name: liquidhandler_1.deck_1 location_id: 01K5HDZZCF27YHD2WDGSXFPPKF description: Deck 1 on liquidhandler_1 - accessible by robotarm_1 representations: liquidhandler_1: deck_position: 1 deck_type: standard max_plates: 1 robotarm_1: gripper_config: standard max_payload: 2.0 position: [10, 15, 5] resource_template_name: plate_nest resource_template_overrides: resource_class: deck_slot resource_description: Deck position accessible by liquid handler and robot arm allow_transfers: true - location_name: liquidhandler_1.deck_2 location_id: 01K5HDZZCF27YHD2WDGSXFPPKG description: Deck 2 on liquidhandler_1 - liquid handler only representations: liquidhandler_1: deck_position: 2 deck_type: standard max_plates: 1 resource_template_name: plate_nest resource_template_overrides: resource_class: deck_slot resource_description: Deck position accessible by liquid handler only allow_transfers: true - location_name: liquidhandler_1.deck_3 location_id: 01K5HDZZCF27YHD2WDGSXFPPKH description: Deck 3 on liquidhandler_1 - liquid handler only representations: liquidhandler_1: deck_position: 3 deck_type: standard max_plates: 1 robotarm_1: gripper_config: standard max_payload: 2.0 position: [20, 15, 5] resource_template_name: plate_nest resource_template_overrides: resource_class: deck_slot resource_description: Deck position accessible by liquid handler and robot arm allow_transfers: true - location_name: liquidhandler_1.deck_4 location_id: 01K5HDZZCF27YHD2WDGSXFPPKJ description: Deck 4 on liquidhandler_1 - liquid handler only representations: liquidhandler_1: deck_position: 4 deck_type: standard max_plates: 1 resource_template_name: plate_nest resource_template_overrides: resource_class: deck_slot resource_description: Deck position accessible by liquid handler only allow_transfers: true - location_name: liquidhandler_2.deck_1 location_id: 01K5HDZZCF27YHD2WDGSXFPPKK description: Deck 1 on liquidhandler_2 - accessible by robotarm_1 representations: liquidhandler_2: deck_position: 1 deck_type: standard max_plates: 1 robotarm_1: gripper_config: standard max_payload: 2.0 position: [5, 15, 5] resource_template_name: plate_nest resource_template_overrides: resource_class: deck_slot resource_description: Deck position accessible by liquid handler and robot arm allow_transfers: true - location_name: liquidhandler_2.deck_2 location_id: 01K5HDZZCF27YHD2WDGSXFPPKM description: Deck 2 on liquidhandler_2 - liquid handler only representations: liquidhandler_2: deck_position: 2 deck_type: standard max_plates: 1 resource_template_name: plate_nest resource_template_overrides: resource_class: deck_slot resource_description: Deck position accessible by liquid handler only allow_transfers: true - location_name: liquidhandler_2.deck_3 location_id: 01K5HDZZCF27YHD2WDGSXFPPKN description: Deck 3 on liquidhandler_2 - accessible by robotarm_1 representations: liquidhandler_2: deck_position: 3 deck_type: standard max_plates: 1 robotarm_1: gripper_config: standard max_payload: 2.0 position: [25, 15, 5] resource_template_name: plate_nest resource_template_overrides: resource_class: deck_slot resource_description: Deck position accessible by liquid handler and robot arm allow_transfers: true - location_name: liquidhandler_2.deck_4 location_id: 01K5HDZZCF27YHD2WDGSXFPPKP description: Deck 4 on liquidhandler_2 - liquid handler only representations: liquidhandler_2: deck_position: 4 deck_type: standard max_plates: 1 resource_template_name: plate_nest resource_template_overrides: resource_class: deck_slot resource_description: Deck position accessible by liquid handler only allow_transfers: true - location_name: platereader_1.plate_carriage location_id: 01K5HDZZCF27YHD2WDGSXFPPKQ description: Plate carriage - accessible by robotarm_1 for plate transport representations: robotarm_1: gripper_config: wide max_payload: 3.0 position: [15, 10, 8] resource_template_name: plate_nest resource_template_overrides: resource_class: plate_carriage resource_description: Plate carriage for platereader_1 allow_transfers: true - location_name: storage_rack location_id: 01K5HDZZCF27YHD2WDGSXFPPKR description: Storage Rack - High-capacity storage accessible only by robot arm representations: robotarm_1: gripper_config: wide max_payload: 10.0 position: [30, 25, 10] resource_template_name: storage_stack resource_template_overrides: resource_class: storage resource_description: High-capacity storage stack for materials capacity: 16 allow_transfers: true # Transfer capabilities (robot arm routes, etc.) location_transfer_capabilities: transfer_templates: - node_name: robotarm_1 action: transfer source_argument_name: source target_argument_name: target cost_weight: 1.0 additional_args: {} additional_location_args: {} - node_name: liquidhandler_1 action: deck_transfer source_argument_name: source_location target_argument_name: target_location cost_weight: 2.0 additional_args: {} additional_location_args: {} - node_name: liquidhandler_2 action: deck_transfer source_argument_name: source_location target_argument_name: target_location cost_weight: 2.0 additional_args: {} additional_location_args: {} override_transfer_templates: source_overrides: storage_rack: - node_name: robotarm_1 action: transfer source_argument_name: source target_argument_name: target cost_weight: 0.8 additional_args: {} additional_location_args: {} target_overrides: platereader_1.plate_carriage: - node_name: robotarm_1 action: transfer source_argument_name: source target_argument_name: target cost_weight: 1.2 additional_args: {} additional_location_args: {} pair_overrides: {} capacity_cost_config: enabled: true high_capacity_threshold: 0.75 full_capacity_threshold: 0.95 high_capacity_multiplier: 2.0 full_capacity_multiplier: 8.0